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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
99
ChIP-seq
84
RNA microarray
56
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
124
Transcription
99
DNA binding
66
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
216
February, 2021
50
May, 2019
47
October, 2019
43
February, 2023
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
1
May, 2021
Available data
237
bam
198
bigWig
135
bed narrowPeak
121
tsv
88
txt
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
4
bed bed3
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
378
Homo sapiens
Biosample type
284
tissue
66
cell line
28
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
377
AMP
1
T1D
Genome assembly (visualization)
245
GRCh38
220
hg19
Lab
377
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
month_released!
July, 2019
BIOSAMPLE
ASSAY
378 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
bone element
84
bone tissue
58
coronary artery
1
5
35
2
tibial artery
1
23
1
2
aorta
1
13
4
1
1
+ See 15 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
megakaryocyte
1
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