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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
99
ChIP-seq
84
RNA microarray
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
124
Transcription
99
DNA binding
10
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
200
February, 2021
50
May, 2019
46
October, 2019
July, 2019
6
August, 2021
5
June, 2019
4
February, 2023
4
March, 2020
3
February, 2020
3
November, 2017
1
May, 2021
Available data
220
bam
197
bigWig
121
tsv
88
txt
83
bed narrowPeak
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
322
Homo sapiens
Biosample type
236
tissue
58
cell line
28
primary cell
Organ
788
pancreas
758
liver
641
connective tissue
473
adipose tissue
408
epithelium
325
heart
268
kidney
265
brain
180
vasculature
175
blood vessel
147
bone element
109
limb
94
artery
85
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
321
AMP
1
T1D
Genome assembly (visualization)
199
hg19
193
GRCh38
Lab
321
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
month_released!
July, 2019
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
322 results
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total RNA-seq
ChIP-seq
RNA microarray
DNase-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
bone element
84
bone tissue
58
tibial artery
1
23
2
aorta
1
13
4
1
1
ascending aorta
1
16
1
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cell line
smooth muscle cell of the coronary artery
52
6
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
megakaryocyte
1
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