Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
99
ChIP-seq
84
RNA microarray
56
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
pCHi-C
1
FAIRE-seq
Assay category
124
Transcription
99
DNA binding
66
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
216
February, 2021
50
May, 2019
47
October, 2019
43
February, 2023
July, 2019
6
August, 2021
5
June, 2019
3
February, 2020
3
March, 2020
3
November, 2017
Available data
237
bam
198
bigWig
135
bed narrowPeak
120
tsv
88
txt
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
4
bed bed3
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
376
Homo sapiens
Biosample type
283
tissue
66
cell line
27
primary cell
Organ
939
pancreas
778
liver
661
connective tissue
511
epithelium
477
adipose tissue
365
heart
341
kidney
266
brain
223
vasculature
218
blood vessel
158
bone element
138
artery
117
limb
85
musculature of body
69
blood
69
bodily fluid
56
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
376
AMP
Genome assembly (visualization)
245
GRCh38
220
hg19
Lab
376
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
1
audit script error
month_released!
July, 2019
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
376 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
tissue
bone element
84
bone tissue
58
coronary artery
1
5
35
2
tibial artery
1
23
1
2
aorta
1
13
4
1
+ See 15 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
See all biosamples
Download