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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
total RNA-seq
26
ChIP-seq
8
ATAC-seq
4
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
52
Transcription
26
DNA binding
13
DNA accessibility
2
3D chromatin structure
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
5
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
21
October, 2019
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
1
May, 2021
Available data
91
bam
76
bigWig
52
tsv
29
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
4
bed bed3+
3
fastq
2
hic
1
bedpe bed3+
1
tar
Organism
94
Homo sapiens
Biosample type
tissue
66
cell line
28
primary cell
Organ
496
epithelium
441
pancreas
428
liver
129
connective tissue
98
vasculature
93
blood vessel
75
heart
69
blood
69
bodily fluid
66
artery
48
kidney
37
embryo
22
vein
14
brain
11
musculature of body
4
eye
1
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
93
AMP
1
T1D
Genome assembly (visualization)
85
hg19
80
GRCh38
Lab
93
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
month_released!
July, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
94 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
megakaryocyte
1
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