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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
99
ChIP-seq
84
RNA microarray
56
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
Assay category
124
Transcription
99
DNA binding
66
DNA accessibility
1
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
216
February, 2021
50
May, 2019
47
October, 2019
43
February, 2023
July, 2019
6
August, 2021
5
June, 2019
3
February, 2020
3
November, 2017
2
March, 2020
1
May, 2021
Available data
237
bam
198
bigWig
135
bed narrowPeak
121
tsv
88
txt
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
4
bed bed3
3
fastq
3
hic
bedpe bed3+
1
tar
Organism
376
Homo sapiens
Biosample type
283
tissue
66
cell line
27
primary cell
Organ
933
pancreas
779
liver
665
connective tissue
506
epithelium
478
adipose tissue
365
heart
343
kidney
268
brain
222
vasculature
217
blood vessel
159
bone element
138
artery
117
limb
84
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
375
AMP
1
T1D
Genome assembly (visualization)
245
GRCh38
218
hg19
Lab
375
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
month_released!
July, 2019
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
376 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
Hi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
5
35
2
tibial artery
1
23
1
2
aorta
1
13
4
1
+ See 15 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
1
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
megakaryocyte
1
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