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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
ATAC-seq
23
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
3
Hi-C
2
pCHi-C
Assay category
55
DNA accessibility
23
DNA binding
13
Transcription
3
3D chromatin structure
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
102
February, 2021
43
February, 2023
11
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
July, 2019
1
May, 2021
Available data
237
bam
bigWig
135
bed narrowPeak
121
tsv
88
txt
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
4
bed bed3
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
180
Homo sapiens
Biosample type
162
tissue
10
cell line
8
primary cell
Organ
321
pancreas
219
kidney
217
epithelium
167
liver
165
heart
113
connective tissue
101
bone element
79
blood vessel
79
vasculature
66
adipose tissue
62
brain
56
artery
54
eye
27
limb
23
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
1
T1D
Genome assembly (visualization)
51
GRCh38
23
hg19
Lab
179
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
month_released!
July, 2019
files.file_type!
bigWig
BIOSAMPLE
ASSAY
180 results
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RNA microarray
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
bone element
84
coronary artery
35
2
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
megakaryocyte
1
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