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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
95
ChIP-seq
84
RNA microarray
56
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
124
Transcription
95
DNA binding
66
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
RNA binding protein
Date released
216
February, 2021
47
May, 2019
47
October, 2019
43
February, 2023
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
2
November, 2017
1
May, 2021
Available data
233
bam
194
bigWig
131
bed narrowPeak
121
tsv
88
txt
75
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
9
bed bed3+
6
tagAlign
4
bed bed3
3
hic
2
bedpe bed3+
2
fastq
1
tar
Organism
374
Homo sapiens
Biosample type
281
tissue
66
cell line
27
primary cell
Organ
931
pancreas
723
liver
656
connective tissue
503
epithelium
474
adipose tissue
357
heart
340
kidney
265
brain
219
vasculature
215
blood vessel
159
bone element
137
artery
117
limb
86
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
373
AMP
1
T1D
Genome assembly (visualization)
241
GRCh38
216
hg19
Lab
373
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
month_released!
July, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
374 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
bone element
84
bone tissue
58
coronary artery
1
4
35
2
tibial artery
1
23
1
2
aorta
1
13
4
1
1
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cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
2
1
kidney capillary endothelial cell
1
megakaryocyte
1
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