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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
60
ChIP-seq
1
pCHi-C
Assay category
62
Transcription
60
DNA binding
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
142
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
4
February, 2023
1
May, 2021
Available data
118
bam
112
bigWig
88
txt
60
fastq
58
tsv
54
bed narrowPeak
54
bigBed narrowPeak
Organism
207
Homo sapiens
Biosample type
146
tissue
60
cell line
1
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
206
AMP
1
T1D
Genome assembly (visualization)
112
GRCh38
112
hg19
Lab
206
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
207 results
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RNA microarray
total RNA-seq
ChIP-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
cell line
GM12878
60
primary cell
megakaryocyte
1
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