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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
total RNA-seq
60
ChIP-seq
13
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
60
DNA binding
21
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
66
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
126
bam
113
bigWig
62
bed narrowPeak
60
fastq
58
tsv
54
bigBed narrowPeak
4
bed bed3
4
txt
Organism
144
Homo sapiens
Biosample type
74
tissue
61
cell line
9
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
347
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
135
AMP
9
T1D
Genome assembly (visualization)
125
hg19
120
GRCh38
Lab
135
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
1
inconsistent control
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
144 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
+ See 8 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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