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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
58
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
3
pCHi-C
Assay category
67
Transcription
18
DNA accessibility
Date released
150
February, 2021
19
April, 2020
February, 2023
2
March, 2020
1
May, 2021
Available data
84
txt
66
bam
60
tsv
58
bigWig
8
bed narrowPeak
Organism
171
Homo sapiens
Biosample type
170
tissue
1
cell line
1
primary cell
Organ
890
pancreas
791
liver
670
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
152
AMP
19
LungMap
1
T1D
Genome assembly (visualization)
66
GRCh38
66
hg19
Lab
152
AMP-T2D consortium
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
172 results
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RNA microarray
total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
lung
10
9
1
distal epiphysis
1
distal epiphysis of femur
1
+ See 6 more…
cell line
MCF-7
1
primary cell
megakaryocyte
1
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