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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
63
total RNA-seq
60
ChIP-seq
13
ATAC-seq
8
snATAC-seq
1
RRBS
1
pCHi-C
Assay category
63
Transcription
60
DNA binding
21
DNA accessibility
1
DNA methylation
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
2
July, 2019
1
January, 2018
1
May, 2021
Available data
127
bam
114
bigWig
88
txt
62
bed narrowPeak
60
fastq
59
tsv
54
bigBed narrowPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
230
Homo sapiens
Biosample type
159
tissue
61
cell line
10
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
221
AMP
9
T1D
Genome assembly (visualization)
127
hg19
121
GRCh38
Lab
221
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
230 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
RRBS
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
pericardium fibroblast
1
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