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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
63
total RNA-seq
20
ChIP-seq
13
ATAC-seq
2
WGBS
2
pCHi-C
1
DNase-seq
1
RRBS
Assay category
63
Transcription
20
DNA binding
14
DNA accessibility
3
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
150
February, 2021
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
2
July, 2019
1
March, 2020
1
May, 2021
1
October, 2017
Available data
91
bam
88
txt
75
bigWig
60
tsv
24
fastq
22
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
186
Homo sapiens
Biosample type
184
tissue
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
185
AMP
1
T1D
Genome assembly (visualization)
86
hg19
83
GRCh38
Lab
185
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
BIOSAMPLE
ASSAY
186 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
RRBS
tissue
bone element
84
bone tissue
58
spleen
20
1
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
pericardium fibroblast
1
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