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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
20
ChIP-seq
2
WGBS
2
pCHi-C
Assay category
62
Transcription
20
DNA binding
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
142
February, 2021
8
November, 2018
7
December, 2018
7
January, 2019
4
February, 2023
1
March, 2020
1
May, 2021
Available data
88
txt
80
bam
72
bigWig
59
tsv
22
fastq
12
bed narrowPeak
12
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
170
Homo sapiens
Biosample type
169
tissue
1
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
169
AMP
1
T1D
Genome assembly (visualization)
72
GRCh38
70
hg19
Lab
169
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
170 results
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RNA microarray
total RNA-seq
ChIP-seq
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
spleen
20
2
1
acetabular part of hip bone
1
ilium
1
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primary cell
megakaryocyte
1
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