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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
20
ChIP-seq
ATAC-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
62
Transcription
20
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
142
February, 2021
9
November, 2018
7
December, 2018
7
January, 2019
4
February, 2023
1
March, 2020
1
May, 2021
Available data
88
txt
81
bam
73
bigWig
59
tsv
23
fastq
13
bed narrowPeak
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
171
Homo sapiens
Biosample type
170
tissue
1
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
170
AMP
1
T1D
Genome assembly (visualization)
73
GRCh38
71
hg19
Lab
170
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
171 results
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RNA microarray
total RNA-seq
ChIP-seq
WGBS
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
spleen
20
2
1
1
acetabular part of hip bone
1
ilium
1
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primary cell
megakaryocyte
1
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