Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
total RNA-seq
60
ChIP-seq
13
ATAC-seq
8
snATAC-seq
3
pCHi-C
Assay category
60
DNA binding
21
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
4
February, 2023
2
May, 2021
1
January, 2018
1
March, 2020
Available data
84
txt
68
bam
62
bed narrowPeak
60
fastq
55
bigWig
54
bigBed narrowPeak
4
bed bed3
1
tsv
Organism
168
Homo sapiens
Biosample type
98
tissue
61
cell line
9
primary cell
Organ
602
liver
543
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
158
AMP
10
T1D
Genome assembly (visualization)
67
hg19
62
GRCh38
Lab
158
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
168 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
thymus
2
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
+ See 9 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
See all biosamples
Download