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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
7
ChIP-seq
4
ATAC-seq
2
Hi-C
1
pCHi-C
Assay category
62
Transcription
7
DNA binding
4
DNA accessibility
2
3D chromatin structure
Target of assay
5
histone
5
histone modification
4
broad histone mark
2
control
1
narrow histone mark
Date released
142
February, 2021
8
February, 2023
8
October, 2019
1
March, 2020
1
May, 2021
Available data
88
txt
86
bam
73
bigWig
58
tsv
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
160
Homo sapiens
Biosample type
150
tissue
10
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
159
AMP
1
T1D
Genome assembly (visualization)
66
hg19
58
GRCh38
Lab
159
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
160 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
endothelial cell of umbilical vein
7
2
megakaryocyte
1
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