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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
77
ChIP-seq
62
total RNA-seq
13
ATAC-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
77
DNA binding
62
Transcription
24
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
16
histone
16
histone modification
10
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
7
narrow histone mark
Date released
150
February, 2021
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
March, 2020
1
May, 2021
Available data
146
bam
128
bigWig
88
txt
75
bed narrowPeak
67
bigBed narrowPeak
60
fastq
58
tsv
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
250
Homo sapiens
Biosample type
158
tissue
61
cell line
31
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
241
AMP
9
T1D
Genome assembly (visualization)
142
hg19
132
GRCh38
Lab
241
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
1
inconsistent control
BIOSAMPLE
ASSAY
250 results
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RNA microarray
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
GM12878
60
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
megakaryocyte
1
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