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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
12
ATAC-seq
11
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
15
DNA accessibility
11
DNA binding
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
narrow histone mark
2
control
Date released
150
February, 2021
15
October, 2019
8
February, 2023
1
March, 2020
1
May, 2021
Available data
88
txt
80
bam
68
bigWig
58
tsv
16
bed narrowPeak
8
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
175
Homo sapiens
Biosample type
158
tissue
17
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
339
kidney
328
heart
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
174
AMP
1
T1D
Genome assembly (visualization)
82
hg19
73
GRCh38
Lab
174
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
175 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
primary cell
endothelial cell of umbilical vein
11
2
2
1
megakaryocyte
1
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