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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
1
pCHi-C
Assay category
3
3D chromatin structure
3
DNA binding
3
Transcription
1
DNA methylation
Target of assay
6
control
Date released
7
July, 2019
3
November, 2017
1
May, 2021
Available data
20
bigWig
17
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
bigBed narrowPeak
9
fastq
8
bed bed3+
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
11
Homo sapiens
Biosample type
149
tissue
11
primary cell
Organ
345
epithelium
324
pancreas
24
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
10
AMP
1
T1D
Genome assembly (visualization)
10
hg19
3
GRCh38
Lab
10
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
brain pericyte
1
megakaryocyte
1
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