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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
total RNA-seq
154
ChIP-seq
80
single cell RNA-seq
59
ATAC-seq
8
DNase-seq
4
WGBS
2
small RNA-seq
1
Hi-C
Assay category
366
Transcription
154
DNA binding
67
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
69
broad histone mark
65
narrow histone mark
18
transcription factor
9
RNA binding protein
2
control
Date released
153
July, 2018
152
August, 2017
72
September, 2018
51
November, 2019
May, 2021
42
October, 2018
39
April, 2018
26
February, 2021
8
October, 2019
7
August, 2020
7
September, 2017
6
March, 2020
6
November, 2018
5
October, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
September, 2020
2
March, 2019
1
June, 2018
1
May, 2019
Available data
578
bam
568
bigWig
366
tsv
357
fastq
185
bed narrowPeak
89
bigBed narrowPeak
29
bed bed3+
14
bed broadPeak
7
bigBed broadPeak
6
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
1
hdf5
Organism
586
Homo sapiens
Biosample type
350
tissue
192
primary cell
50
cell line
Organ
592
pancreas
565
connective tissue
531
liver
424
adipose tissue
285
epithelium
263
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
27
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
0
bone marrow
Project
577
AMP
10
HPAP
5
T1D
Genome assembly (visualization)
615
hg19
592
GRCh38
Lab
579
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
47
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
month_released!
May, 2021
BIOSAMPLE
ASSAY
592 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
tissue
islet of Langerhans
224
25
6
22
1
body of pancreas
2
26
4
4
2
2
pancreas
1
13
2
2
endocrine pancreas
14
primary cell
pancreatic alpha cell
10
7
12
13
pancreatic beta cell
10
7
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
5
pancreatic endocrine cell
23
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cell line
EndoC_BH1
29
12
1
Panc1
6
1
1
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