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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
32
DNA accessibility
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
27
February, 2023
7
June, 2019
7
October, 2019
1
July, 2019
1
May, 2021
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
43
Homo sapiens
Biosample type
37
tissue
6
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
42
AMP
1
T1D
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
42
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assay_slims!
Transcription
BIOSAMPLE
ASSAY
43 results
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ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
RRBS
tissue
retina
15
3
pigmented layer of retina
12
islet of Langerhans
1
2
4
primary cell
retinal pigment epithelial cell
3
1
1
megakaryocyte
1
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