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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
25
ChIP-seq
total RNA-seq
6
pCHi-C
5
DNase-seq
2
WGBS
1
RRBS
Assay category
34
DNA accessibility
25
DNA binding
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
27
February, 2023
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
7
October, 2019
1
July, 2019
1
March, 2020
1
May, 2021
1
October, 2017
Available data
47
bed narrowPeak
31
bam
24
fastq
22
bigWig
19
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
tsv
Organism
68
Homo sapiens
Biosample type
62
tissue
6
primary cell
Organ
602
liver
549
pancreas
393
epithelium
321
heart
294
kidney
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
67
AMP
1
T1D
Genome assembly (visualization)
48
hg19
22
GRCh38
Lab
67
AMP-T2D consortium
1
Kyle Gaulton, UCSD
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
WGBS
RRBS
tissue
spleen
1
20
1
1
2
retina
15
3
pigmented layer of retina
12
islet of Langerhans
1
2
4
primary cell
retinal pigment epithelial cell
3
1
1
megakaryocyte
1
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