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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
pCHi-C
4
DNase-seq
2
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
2
DNA binding
1
DNA methylation
Target of assay
3
histone
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
1
May, 2021
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
54
tissue
5
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
58
AMP
1
T1D
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
58
AMP-T2D consortium
1
Kyle Gaulton, UCSD
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
2
1
megakaryocyte
1
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