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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
203
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
16
July, 2019
October, 2017
12
February, 2020
2
March, 2020
Available data
200
bam
181
bigWig
164
bed narrowPeak
104
tagAlign
88
bigBed narrowPeak
26
tsv
12
bed broadPeak
9
fastq
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
234
Homo sapiens
Biosample type
218
tissue
16
primary cell
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
234
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
234
AMP
Genome assembly (visualization)
177
GRCh38
134
hg19
Lab
234
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
October, 2017
BIOSAMPLE
ASSAY
234 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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