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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
148
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
82
October, 2019
49
November, 2017
16
July, 2019
13
May, 2019
12
February, 2020
5
October, 2017
2
March, 2020
Available data
147
bam
127
bigWig
109
bed narrowPeak
73
tagAlign
36
bigBed narrowPeak
26
tsv
12
fastq
11
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
179
Homo sapiens
Biosample type
163
tissue
16
primary cell
Organ
720
liver
695
pancreas
606
connective tissue
463
adipose tissue
357
epithelium
259
heart
179
brain
176
kidney
147
bone element
133
vasculature
129
blood vessel
78
artery
60
blood
60
bodily fluid
44
limb
41
musculature of body
33
embryo
29
eye
24
nerve
19
spleen
10
lung
10
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
Genome assembly (visualization)
122
GRCh38
115
hg19
Lab
179
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
layer of hippocampus
11
brain
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
angular gyrus
8
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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