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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
37
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Date released
30
June, 2019
7
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
1
October, 2017
1
October, 2019
Available data
38
bigWig
35
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
Organism
44
Homo sapiens
Biosample type
35
tissue
9
primary cell
Organ
249
pancreas
194
epithelium
177
kidney
97
bone element
93
heart
67
vasculature
64
blood vessel
50
connective tissue
49
artery
49
limb
48
musculature of body
46
liver
44
brain
37
eye
18
ureter
17
adipose tissue
12
skeleton
11
lung
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
34
GRCh38
29
hg19
Lab
44
AMP-T2D consortium
assay_slims!
DNA binding
Transcription
BIOSAMPLE
ASSAY
44 results
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DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
frontal cortex
2
1
Ammon's horn
1
1
cerebellum (Hemisphere)
1
1
caudate nucleus
1
+ See 11 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
See all biosamples
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