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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
Transcription
3
3D chromatin structure
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
5
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
231
bam
210
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
3
hdf5
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
260
Homo sapiens
Biosample type
243
tissue
17
primary cell
Organ
591
liver
414
pancreas
270
epithelium
260
brain
225
kidney
196
connective tissue
177
heart
166
vasculature
161
blood vessel
114
limb
97
bone element
84
adipose tissue
83
artery
81
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
260
AMP
Genome assembly (visualization)
205
GRCh38
150
hg19
Lab
260
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA methylation
Transcription
BIOSAMPLE
ASSAY
260 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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