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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
148
DNA binding
37
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
82
October, 2019
49
November, 2017
30
June, 2019
13
May, 2019
7
July, 2019
6
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
170
bam
150
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
192
Homo sapiens
Biosample type
174
tissue
18
primary cell
Organ
556
liver
389
pancreas
279
epithelium
214
kidney
192
brain
159
connective tissue
150
heart
124
vasculature
118
blood vessel
97
bone element
81
limb
70
adipose tissue
69
artery
69
blood
69
bodily fluid
67
musculature of body
42
eye
22
nerve
21
spleen
19
embryo
18
ureter
13
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
192
AMP
Genome assembly (visualization)
144
GRCh38
127
hg19
Lab
192
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
Transcription
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
7
14
1
1
layer of hippocampus
11
angular gyrus
8
caudate nucleus
7
1
substantia nigra
8
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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