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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
16
October, 2017
7
July, 2019
1
February, 2023
Available data
211
bam
190
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
tsv
19
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
228
Homo sapiens
Biosample type
215
tissue
13
primary cell
Organ
611
liver
521
pancreas
349
epithelium
249
kidney
228
brain
197
connective tissue
195
heart
157
vasculature
153
blood vessel
101
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
52
eye
36
nerve
23
embryo
23
spleen
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
228
AMP
Genome assembly (visualization)
173
GRCh38
130
hg19
Lab
228
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
files.file_type!
tsv
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 66 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
brain pericyte
1
See all biosamples
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