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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
FAIRE-seq
Assay category
196
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
30
control
3
RNA binding protein
3
transcription factor
Date released
83
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
12
July, 2019
9
October, 2017
2
November, 2018
Available data
242
bam
221
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
242
Homo sapiens
Biosample type
225
tissue
17
primary cell
Organ
687
pancreas
681
liver
593
connective tissue
442
adipose tissue
316
epithelium
242
brain
211
heart
184
vasculature
179
blood vessel
143
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
19
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
242
AMP
Genome assembly (visualization)
215
GRCh38
154
hg19
Lab
242
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
242 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
13
14
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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