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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
32
DNase-seq
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
171
DNA binding
34
DNA accessibility
7
Transcription
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
77
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
8
July, 2019
7
October, 2017
2
November, 2018
Available data
210
bam
209
bigWig
201
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
7
tsv
1
tagAlign bed3+
Organism
212
Homo sapiens
Biosample type
198
tissue
14
primary cell
Organ
372
liver
305
pancreas
218
epithelium
212
brain
194
kidney
157
heart
133
vasculature
129
blood vessel
98
connective tissue
92
limb
74
artery
54
blood
54
bodily fluid
49
musculature of body
28
adipose tissue
27
nerve
18
ureter
16
spleen
15
embryo
12
vein
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
212
AMP
Genome assembly (visualization)
212
GRCh38
159
hg19
Lab
212
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
212 results
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ChIP-seq
DNase-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
temporal lobe
13
1
caudate nucleus
12
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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