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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
7
DNA accessibility
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
June, 2019
28
May, 2019
16
October, 2017
14
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
208
bam
187
bigWig
173
bed narrowPeak
118
tagAlign
97
bigBed narrowPeak
21
fastq
17
bed broadPeak
9
tsv
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
239
Homo sapiens
Biosample type
223
tissue
16
primary cell
Organ
600
liver
539
pancreas
373
epithelium
246
heart
239
brain
213
kidney
192
connective tissue
168
vasculature
164
blood vessel
97
bone element
92
adipose tissue
83
artery
83
limb
69
blood
69
bodily fluid
47
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
20
lung
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
239
AMP
Genome assembly (visualization)
182
GRCh38
139
hg19
Lab
239
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
total RNA-seq
month_released!
June, 2019
BIOSAMPLE
ASSAY
239 results
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ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
2
1
layer of hippocampus
23
substantia nigra
16
temporal lobe
15
1
angular gyrus
15
+ See 69 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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