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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
30
DNase-seq
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
212
DNA binding
33
DNA accessibility
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
85
November, 2017
85
October, 2019
28
June, 2019
28
May, 2019
16
October, 2017
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
221
bam
197
bigWig
196
bed narrowPeak
120
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bigBed broadPeak
30
bed bed3+
15
fastq
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
247
Homo sapiens
Biosample type
241
tissue
6
primary cell
Organ
596
liver
545
pancreas
epithelium
306
heart
288
kidney
255
brain
205
connective tissue
168
vasculature
163
blood vessel
110
limb
97
bone element
90
adipose tissue
84
artery
82
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
247
AMP
Genome assembly (visualization)
198
GRCh38
138
hg19
Lab
247
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
total RNA-seq
organ_slims!
epithelium
month_released!
July, 2019
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
astrocyte of the hippocampus
1
brain pericyte
1
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