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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
214
DNA binding
Target of assay
183
histone
183
histone modification
116
narrow histone mark
67
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
28
May, 2019
11
October, 2017
Available data
193
bam
169
bigWig
167
bed narrowPeak
114
tagAlign
91
bigBed narrowPeak
14
fastq
13
bed broadPeak
6
bigBed broadPeak
1
tagAlign bed3+
Organism
214
Homo sapiens
Biosample type
205
tissue
9
primary cell
Organ
539
liver
214
brain
164
pancreas
136
connective tissue
108
epithelium
102
vasculature
99
blood vessel
94
heart
66
limb
61
adipose tissue
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
21
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
214
AMP
Genome assembly (visualization)
168
GRCh38
120
hg19
Lab
214
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
214 results
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ChIP-seq
tissue
layer of hippocampus
23
brain
16
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 63 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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