Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
27
control
2
RNA binding protein
2
transcription factor
Date released
88
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
Available data
193
bam
169
bigWig
168
bed narrowPeak
118
tagAlign
92
bigBed narrowPeak
15
fastq
13
bed broadPeak
4
bigBed broadPeak
1
tagAlign bed3+
Organism
215
Homo sapiens
Biosample type
209
tissue
6
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
215
AMP
Genome assembly (visualization)
169
GRCh38
120
hg19
Lab
215
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
215 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 63 more…
primary cell
astrocyte of the cerebellum
3
choroid plexus epithelial cell
3
See all biosamples
Download