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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
1
DNA accessibility
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
85
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
1
July, 2019
Available data
191
bam
167
bed narrowPeak
167
bigWig
118
tagAlign
91
bigBed narrowPeak
12
fastq
11
bed broadPeak
2
bigBed broadPeak
1
tagAlign bed3+
Organism
213
Homo sapiens
Biosample type
210
tissue
3
primary cell
Organ
552
liver
220
pancreas
219
brain
153
connective tissue
134
heart
epithelium
103
vasculature
100
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
53
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
18
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
213
AMP
Genome assembly (visualization)
167
GRCh38
118
hg19
Lab
213
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
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