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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
770
ChIP-seq
206
total RNA-seq
38
DNase-seq
27
ATAC-seq
7
Hi-C
7
small RNA-seq
5
WGBS
5
pCHi-C
4
RRBS
4
single cell RNA-seq
2
STARR-seq
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
770
DNA binding
Target of assay
341
transcription factor
290
histone modification
289
histone
177
narrow histone mark
136
control
112
broad histone mark
82
recombinant protein
61
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
89
October, 2019
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
28
May, 2019
22
August, 2021
15
October, 2017
Available data
706
bam
604
bigWig
583
bed narrowPeak
470
fastq
446
bigBed narrowPeak
204
tagAlign
73
bed broadPeak
64
bigBed broadPeak
6
bed bed3+
3
tar
1
tagAlign bed3+
Organism
770
Homo sapiens
Biosample type
378
cell line
364
tissue
15
in vitro differentiated cells
13
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
770
AMP
Genome assembly (visualization)
552
hg19
531
GRCh38
Lab
752
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
770 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
145
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
+ See 65 more…
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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