Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
706
ChIP-seq
164
total RNA-seq
37
DNase-seq
7
small RNA-seq
5
ATAC-seq
3
single cell RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
706
DNA binding
Target of assay
329
transcription factor
246
histone modification
245
histone
155
narrow histone mark
128
control
90
broad histone mark
82
recombinant protein
60
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
392
November, 2017
87
October, 2019
63
December, 2017
50
May, 2020
49
November, 2018
28
May, 2019
25
August, 2017
8
October, 2017
4
August, 2021
Available data
706
bam
604
bigWig
583
bed narrowPeak
470
fastq
446
bigBed narrowPeak
204
tagAlign
73
bed broadPeak
64
bigBed broadPeak
6
bed bed3+
3
tar
1
tagAlign bed3+
Organism
706
Homo sapiens
Biosample type
359
cell line
319
tissue
15
in vitro differentiated cells
13
primary cell
Organ
510
liver
198
pancreas
196
brain
129
epithelium
102
connective tissue
102
vasculature
99
blood vessel
93
heart
65
limb
60
blood
60
bodily fluid
52
kidney
37
adipose tissue
35
nerve
34
artery
22
embryo
20
spleen
17
musculature of body
17
vein
3
eye
1
pituitary gland
Project
706
AMP
Genome assembly (visualization)
535
hg19
529
GRCh38
Lab
706
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
16
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
706 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
359
tissue
liver
122
layer of hippocampus
20
angular gyrus
15
temporal lobe
15
caudate nucleus
14
+ See 63 more…
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
Download