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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
32
DNA accessibility
17
Transcription
Date released
30
June, 2019
12
February, 2020
4
July, 2019
2
November, 2018
1
October, 2019
Available data
37
bam
37
bigWig
32
bed bed3+
32
bed broadPeak
32
bed narrowPeak
32
bigBed broadPeak
32
bigBed narrowPeak
17
tsv
2
fastq
Organism
49
Homo sapiens
Biosample type
44
tissue
5
primary cell
Organ
483
connective tissue
411
pancreas
400
adipose tissue
195
liver
150
epithelium
141
kidney
102
heart
72
vasculature
70
blood vessel
62
bone element
60
artery
49
brain
43
limb
39
musculature of body
23
eye
18
ureter
14
embryo
7
nerve
4
skeleton
2
vein
1
pericardium
1
spinal cord
1
spleen
Project
49
AMP
Genome assembly (visualization)
37
GRCh38
27
hg19
Lab
49
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
49 results
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DNase-seq
total RNA-seq
tissue
brain
14
1
frontal cortex
2
2
Ammon's horn
1
1
caudate nucleus
1
1
cerebellum
2
+ See 17 more…
primary cell
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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