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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
pCHi-C
Assay category
47
DNA binding
12
Transcription
2
DNA accessibility
Target of assay
28
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
12
February, 2020
9
October, 2017
8
October, 2019
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
27
bam
14
tsv
6
fastq
4
bigWig
1
bed bed3
1
bed broadPeak
1
bed narrowPeak
Organism
63
Homo sapiens
Biosample type
60
tissue
3
primary cell
Organ
309
pancreas
257
liver
222
epithelium
144
kidney
123
heart
116
connective tissue
93
bone element
67
adipose tissue
63
brain
54
eye
41
vasculature
40
blood vessel
38
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
GRCh38
147
hg19
Lab
63
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
assembly!!
GRCh38
month_released!
July, 2019
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
9
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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