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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
total RNA-seq
11
ChIP-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
12
Transcription
11
DNA binding
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
9
control
2
histone
2
histone modification
2
narrow histone mark
Date released
12
February, 2020
7
November, 2017
6
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
1
October, 2017
1
October, 2019
Available data
tagAlign
28
bam
14
tsv
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
33
Homo sapiens
Biosample type
26
tissue
7
primary cell
Organ
300
pancreas
228
epithelium
205
liver
149
kidney
125
heart
96
connective tissue
93
bone element
59
adipose tissue
55
eye
43
vasculature
41
blood vessel
33
brain
28
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
GRCh38
121
hg19
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assembly!
GRCh38
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
33 results
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total RNA-seq
ChIP-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
1
1
1
Ammon's horn
1
1
cerebellum (Hemisphere)
1
1
frontal cortex
1
1
layer of hippocampus
2
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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