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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
45
DNA binding
12
Transcription
3
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
26
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
26
November, 2017
12
February, 2020
9
October, 2017
8
October, 2019
4
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
26
bam
14
tsv
5
bigWig
4
fastq
2
bed bed3+
2
bed narrowPeak
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
Organism
65
Homo sapiens
Biosample type
62
tissue
3
primary cell
Organ
311
pancreas
260
liver
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
GRCh38
154
hg19
Lab
65
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
organ_slims!
epithelium
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
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primary cell
astrocyte of the cerebellum
1
1
brain pericyte
1
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