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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
Hi-C
Assay category
46
DNA binding
12
Transcription
3
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
27
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
12
February, 2020
9
October, 2017
8
October, 2019
4
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
27
bam
14
tsv
5
bigWig
5
fastq
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed bed3+
1
bed broadPeak
1
bigBed narrowPeak
1
hdf5
Organism
66
Homo sapiens
Biosample type
62
tissue
4
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
GRCh38
157
hg19
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
organ_slims!
connective tissue
blood vessel
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
Hi-C
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
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primary cell
astrocyte of the cerebellum
1
1
choroid plexus epithelial cell
1
1
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