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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
12
total RNA-seq
5
Hi-C
2
ATAC-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
54
DNA binding
12
Transcription
5
3D chromatin structure
4
DNA accessibility
2
DNA methylation
Target of assay
30
control
24
histone
24
histone modification
13
broad histone mark
11
narrow histone mark
Date released
28
November, 2017
17
October, 2019
12
February, 2020
9
October, 2017
6
July, 2019
3
March, 2020
3
May, 2019
1
February, 2023
Available data
36
bam
36
tagAlign
14
tsv
11
bigWig
6
fastq
3
bed bed3+
3
bed broadPeak
3
bed narrowPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
2
bigBed narrowPeak
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
79
Homo sapiens
Biosample type
62
tissue
17
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
GRCh38
181
hg19
Lab
79
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 20 more…
primary cell
endothelial cell of umbilical vein
7
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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