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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
12
total RNA-seq
5
Hi-C
2
ATAC-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
48
DNA binding
12
Transcription
5
3D chromatin structure
4
DNA accessibility
2
DNA methylation
Target of assay
25
control
23
histone
23
histone modification
12
broad histone mark
11
narrow histone mark
Date released
25
November, 2017
17
October, 2019
12
February, 2020
6
July, 2019
6
October, 2017
3
March, 2020
3
May, 2019
1
February, 2023
Available data
36
bam
36
tagAlign
14
tsv
11
bigWig
fastq
3
bed bed3+
3
bed broadPeak
3
bed narrowPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
2
bigBed narrowPeak
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
73
Homo sapiens
Biosample type
59
tissue
14
primary cell
Organ
197
pancreas
154
epithelium
149
kidney
138
liver
127
heart
93
bone element
92
connective tissue
63
brain
55
eye
46
adipose tissue
43
vasculature
42
blood vessel
41
musculature of body
26
limb
20
lung
13
artery
12
nerve
10
vein
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
GRCh38
164
hg19
Lab
73
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
files.file_type!
fastq
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
6
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 20 more…
primary cell
endothelial cell of umbilical vein
7
2
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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