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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
80
DNA binding
24
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
74
histone
74
histone modification
56
narrow histone mark
18
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
9
November, 2017
2
November, 2018
1
February, 2023
Available data
159
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
121
Homo sapiens
Biosample type
100
tissue
21
primary cell
Organ
644
pancreas
588
connective tissue
583
liver
425
adipose tissue
306
epithelium
184
heart
161
vasculature
155
blood vessel
129
kidney
121
brain
96
limb
89
artery
70
bone element
60
musculature of body
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
Project
121
AMP
Genome assembly (visualization)
135
GRCh38
121
hg19
Lab
121
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
5
14
1
1
1
temporal lobe
13
1
1
angular gyrus
12
frontal cortex
2
1
1
1
superior frontal gyrus
3
+ See 40 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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