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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
21
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
123
DNA binding
23
DNA accessibility
12
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
25
May, 2019
19
June, 2019
16
July, 2019
15
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
157
bigWig
154
bam
140
bed narrowPeak
64
bigBed narrowPeak
43
tagAlign
36
bed broadPeak
27
bigBed broadPeak
23
bed bed3+
17
fastq
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
162
Homo sapiens
Biosample type
143
tissue
19
primary cell
Organ
658
pancreas
625
liver
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
162
AMP
Genome assembly (visualization)
216
GRCh38
162
hg19
Lab
162
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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