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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
120
DNA binding
24
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
6
control
RNA binding protein
3
transcription factor
Date released
78
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
12
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
156
bigWig
152
bam
138
bed narrowPeak
62
bigBed narrowPeak
43
tagAlign
34
bed broadPeak
25
bed bed3+
25
bigBed broadPeak
14
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
161
Homo sapiens
Biosample type
143
tissue
18
primary cell
Organ
649
pancreas
579
connective tissue
570
liver
421
adipose tissue
303
epithelium
182
heart
161
brain
160
vasculature
155
blood vessel
127
kidney
96
limb
92
artery
73
musculature of body
70
bone element
45
blood
45
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
161
AMP
Genome assembly (visualization)
214
GRCh38
161
hg19
Lab
161
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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