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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
32
ChIP-seq
9
DNase-seq
8
ATAC-seq
6
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
57
Transcription
32
DNA binding
18
DNA accessibility
6
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
10
control
9
broad histone mark
9
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
21
October, 2019
10
July, 2019
9
November, 2017
7
June, 2019
1
March, 2020
Available data
107
bam
96
bigWig
57
tsv
38
bed narrowPeak
26
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
9
fastq
6
tagAlign
4
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
114
Homo sapiens
Biosample type
tissue
66
cell line
48
primary cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
114
AMP
Genome assembly (visualization)
106
hg19
94
GRCh38
Lab
114
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
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