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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
93
total RNA-seq
73
single cell RNA-seq
72
ATAC-seq
47
WGBS
21
DNase-seq
9
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
166
Transcription
95
DNA binding
94
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Target of assay
67
histone
67
histone modification
36
narrow histone mark
31
broad histone mark
25
control
6
RNA binding protein
6
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
23
June, 2019
19
September, 2020
18
July, 2019
9
November, 2017
7
August, 2020
6
February, 2021
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
251
bam
242
bigWig
241
fastq
119
tsv
111
bed narrowPeak
80
zippedFastqFolder
66
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
26
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
4
tagAlign
3
cool
1
tar
Organism
417
Homo sapiens
Biosample type
417
primary cell
280
tissue
79
cell line
24
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
265
AMP
152
HPAP
Genome assembly (visualization)
238
hg19
233
GRCh38
Lab
265
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
417 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
12
35
31
1
pancreatic beta cell
13
21
12
23
16
1
pancreatic acinar cell
8
4
12
9
1
pancreatic ductal cell
13
4
10
4
endothelial cell of umbilical vein
17
2
2
1
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